[AETHER-72][AETHER-75] Update atomix to 3.1.9

Additionally fix an issue brough by 24302

Change-Id: I60192953f0ebef6730ad6268b10bbf8a59934156
diff --git a/WORKSPACE b/WORKSPACE
index bb3caf7..29dca06 100644
--- a/WORKSPACE
+++ b/WORKSPACE
@@ -42,8 +42,8 @@
 
 # Use this to build against locally built Atomix
 #local_atomix(
-#    path = "/Users/tom/atomix",
-#    version = "3.0.8-SNAPSHOT",
+#    path = "/home/developer/atomix",
+#    version = "3.1.9-SNAPSHOT",
 #)
 
 # Use this to build against locally built YANG tools
diff --git a/deps/deps.json b/deps/deps.json
index 8e61268..a59031e 100644
--- a/deps/deps.json
+++ b/deps/deps.json
@@ -126,13 +126,13 @@
     "aopalliance-repackaged": "mvn:org.glassfish.hk2.external:aopalliance-repackaged:2.5.0-b42",
     "amqp-client": "mvn:com.rabbitmq:amqp-client:jar:3.6.1",
     "asm": "mvn:org.ow2.asm:asm:5.2",
-    "atomix": "mvn:io.atomix:atomix:3.1.5",
-    "atomix-cluster": "mvn:io.atomix:atomix-cluster:3.1.5",
-    "atomix-primary-backup": "mvn:io.atomix:atomix-primary-backup:3.1.5",
-    "atomix-primitive": "mvn:io.atomix:atomix-primitive:3.1.5",
-    "atomix-raft": "mvn:io.atomix:atomix-raft:3.1.5",
-    "atomix-storage": "mvn:io.atomix:atomix-storage:3.1.5",
-    "atomix-utils": "mvn:io.atomix:atomix-utils:3.1.5",
+    "atomix": "mvn:io.atomix:atomix:3.1.9",
+    "atomix-cluster": "mvn:io.atomix:atomix-cluster:3.1.9",
+    "atomix-primary-backup": "mvn:io.atomix:atomix-primary-backup:3.1.9",
+    "atomix-primitive": "mvn:io.atomix:atomix-primitive:3.1.9",
+    "atomix-raft": "mvn:io.atomix:atomix-raft:3.1.9",
+    "atomix-storage": "mvn:io.atomix:atomix-storage:3.1.9",
+    "atomix-utils": "mvn:io.atomix:atomix-utils:3.1.9",
     "classgraph": "mvn:io.github.classgraph:classgraph:4.2.3",
     "commons-codec": "mvn:commons-codec:commons-codec:1.10",
     "commons-cli": "mvn:commons-cli:commons-cli:1.3",
@@ -178,18 +178,11 @@
     "moshi": "mvn:com.squareup.moshi:moshi:1.4.0",
     "okio": "mvn:com.squareup.okio:okio:1.14.0",
     "jacoco-agent-runtime": "mvn:org.jacoco:org.jacoco.agent:jar:runtime:0.8.2",
-<<<<<<< HEAD
-    "jackson-annotations": "mvn:com.fasterxml.jackson.core:jackson-annotations:2.10.0",
-    "jackson-core": "mvn:com.fasterxml.jackson.core:jackson-core:2.10.0",
-    "jackson-databind": "mvn:com.fasterxml.jackson.core:jackson-databind:2.10.0",
-    "jackson-dataformat-yaml": "mvn:com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:2.10.0",
-=======
     "jackson-annotations": "mvn:com.fasterxml.jackson.core:jackson-annotations:2.11.0",
     "jackson-core": "mvn:com.fasterxml.jackson.core:jackson-core:2.11.0",
     "jackson-databind": "mvn:com.fasterxml.jackson.core:jackson-databind:2.11.0",
     "jackson-datatype-jsr310": "mvn:com.fasterxml.jackson.datatype:jackson-datatype-jsr310:2.11.0",
     "jackson-dataformat-yaml": "mvn:com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:2.11.0",
->>>>>>> Bumpup kubernetes client from 4.7.1 to 5.0.0 (support up to kubernetes 1.19)
 
     // Note: grpc imports "javax_annotation_api" has an http file, so we need to give a different name here
     // See WORKSPACE
diff --git a/tools/build/bazel/generate_workspace.bzl b/tools/build/bazel/generate_workspace.bzl
index 1f6bb5e..9cc27c8 100644
--- a/tools/build/bazel/generate_workspace.bzl
+++ b/tools/build/bazel/generate_workspace.bzl
@@ -1,4 +1,4 @@
-# ***** This file was auto-generated at Fri, 26 Mar 2021 17:22:18 GMT. Do not edit this file manually. *****
+# ***** This file was auto-generated at Tue, 6 Apr 2021 11:02:03 GMT. Do not edit this file manually. *****
 # ***** Use onos-lib-gen *****
 
 load("//tools/build/bazel:variables.bzl", "ONOS_GROUP_ID", "ONOS_VERSION")
@@ -145,45 +145,45 @@
     if "atomix" not in native.existing_rules():
         java_import_external(
             name = "atomix",
-            jar_sha256 = "967a951e5b11fed0c08bb2290cc2c7583fe786069ce896b70588a20b3a0af65f",
+            jar_sha256 = "e4700e1acf329747fc41f49279d9066c368877f1381f609fcb4c0ce63824e0c6",
             licenses = ["notice"],
-            jar_urls = ["https://repo1.maven.org/maven2/io/atomix/atomix/3.1.5/atomix-3.1.5.jar"],        )
+            jar_urls = ["https://repo1.maven.org/maven2/io/atomix/atomix/3.1.9/atomix-3.1.9.jar"],        )
     if "atomix_cluster" not in native.existing_rules():
         java_import_external(
             name = "atomix_cluster",
-            jar_sha256 = "bcf815de1efb668df25e7c5293f2a4352e96073ef7c82fe92272b3adfc4a0cd5",
+            jar_sha256 = "38c3ee00cdc48fa00012c543abbd7cf5975568233ce25dbbb7d4c422b7579b57",
             licenses = ["notice"],
-            jar_urls = ["https://repo1.maven.org/maven2/io/atomix/atomix-cluster/3.1.5/atomix-cluster-3.1.5.jar"],        )
+            jar_urls = ["https://repo1.maven.org/maven2/io/atomix/atomix-cluster/3.1.9/atomix-cluster-3.1.9.jar"],        )
     if "atomix_primary_backup" not in native.existing_rules():
         java_import_external(
             name = "atomix_primary_backup",
-            jar_sha256 = "814a5378bbe5190d717492d843e6aaa04a7a996315721a27291c207b30706d29",
+            jar_sha256 = "f87527364ac10e006b714f55ce1a6d92a1f27fa27e8813de82454665876838d6",
             licenses = ["notice"],
-            jar_urls = ["https://repo1.maven.org/maven2/io/atomix/atomix-primary-backup/3.1.5/atomix-primary-backup-3.1.5.jar"],        )
+            jar_urls = ["https://repo1.maven.org/maven2/io/atomix/atomix-primary-backup/3.1.9/atomix-primary-backup-3.1.9.jar"],        )
     if "atomix_primitive" not in native.existing_rules():
         java_import_external(
             name = "atomix_primitive",
-            jar_sha256 = "f78516e007f6faa9788f198a20aebe5150808a6b7779984a59530991be36c7c8",
+            jar_sha256 = "12c7ff4e65ad683419906d86d320250ce4ea160fbb394b90a577116563cb81b4",
             licenses = ["notice"],
-            jar_urls = ["https://repo1.maven.org/maven2/io/atomix/atomix-primitive/3.1.5/atomix-primitive-3.1.5.jar"],        )
+            jar_urls = ["https://repo1.maven.org/maven2/io/atomix/atomix-primitive/3.1.9/atomix-primitive-3.1.9.jar"],        )
     if "atomix_raft" not in native.existing_rules():
         java_import_external(
             name = "atomix_raft",
-            jar_sha256 = "57f91b4ed8281a5d26739491d317fd2b2d6788323d8eebca696f0b619d1b1b87",
+            jar_sha256 = "69a3188bc34d5f5629b6321be04c10ca3064faecbb6d139015c1fd5bcaac713f",
             licenses = ["notice"],
-            jar_urls = ["https://repo1.maven.org/maven2/io/atomix/atomix-raft/3.1.5/atomix-raft-3.1.5.jar"],        )
+            jar_urls = ["https://repo1.maven.org/maven2/io/atomix/atomix-raft/3.1.9/atomix-raft-3.1.9.jar"],        )
     if "atomix_storage" not in native.existing_rules():
         java_import_external(
             name = "atomix_storage",
-            jar_sha256 = "c751e133b9d8ac00b652ffc9169cf1cbff97c825103ef794a6e065ab3bbe6e99",
+            jar_sha256 = "a049ae8a671bcacea4cbc8db31e78aa8c4f0bca4b3871929e06644d70d33e857",
             licenses = ["notice"],
-            jar_urls = ["https://repo1.maven.org/maven2/io/atomix/atomix-storage/3.1.5/atomix-storage-3.1.5.jar"],        )
+            jar_urls = ["https://repo1.maven.org/maven2/io/atomix/atomix-storage/3.1.9/atomix-storage-3.1.9.jar"],        )
     if "atomix_utils" not in native.existing_rules():
         java_import_external(
             name = "atomix_utils",
-            jar_sha256 = "492b1b0515518dc2003e28e0c42316e532cd2d9478256d6812d7f0b92fd7ef9d",
+            jar_sha256 = "dba1d7b0fa900f39cee3160045e3cd624ffcaf18f9756fdadadb1c876ef331e0",
             licenses = ["notice"],
-            jar_urls = ["https://repo1.maven.org/maven2/io/atomix/atomix-utils/3.1.5/atomix-utils-3.1.5.jar"],        )
+            jar_urls = ["https://repo1.maven.org/maven2/io/atomix/atomix-utils/3.1.9/atomix-utils-3.1.9.jar"],        )
     if "classgraph" not in native.existing_rules():
         java_import_external(
             name = "classgraph",
@@ -1472,13 +1472,13 @@
 artifact_map["@aopalliance_repackaged//:aopalliance_repackaged"] = "mvn:org.glassfish.hk2.external:aopalliance-repackaged:jar:2.5.0-b42"
 artifact_map["@amqp_client//:amqp_client"] = "mvn:com.rabbitmq:amqp-client:jar:3.6.1"
 artifact_map["@asm//:asm"] = "mvn:org.ow2.asm:asm:jar:5.2"
-artifact_map["@atomix//:atomix"] = "mvn:io.atomix:atomix:jar:3.1.5"
-artifact_map["@atomix_cluster//:atomix_cluster"] = "mvn:io.atomix:atomix-cluster:jar:3.1.5"
-artifact_map["@atomix_primary_backup//:atomix_primary_backup"] = "mvn:io.atomix:atomix-primary-backup:jar:3.1.5"
-artifact_map["@atomix_primitive//:atomix_primitive"] = "mvn:io.atomix:atomix-primitive:jar:3.1.5"
-artifact_map["@atomix_raft//:atomix_raft"] = "mvn:io.atomix:atomix-raft:jar:3.1.5"
-artifact_map["@atomix_storage//:atomix_storage"] = "mvn:io.atomix:atomix-storage:jar:3.1.5"
-artifact_map["@atomix_utils//:atomix_utils"] = "mvn:io.atomix:atomix-utils:jar:3.1.5"
+artifact_map["@atomix//:atomix"] = "mvn:io.atomix:atomix:jar:3.1.9"
+artifact_map["@atomix_cluster//:atomix_cluster"] = "mvn:io.atomix:atomix-cluster:jar:3.1.9"
+artifact_map["@atomix_primary_backup//:atomix_primary_backup"] = "mvn:io.atomix:atomix-primary-backup:jar:3.1.9"
+artifact_map["@atomix_primitive//:atomix_primitive"] = "mvn:io.atomix:atomix-primitive:jar:3.1.9"
+artifact_map["@atomix_raft//:atomix_raft"] = "mvn:io.atomix:atomix-raft:jar:3.1.9"
+artifact_map["@atomix_storage//:atomix_storage"] = "mvn:io.atomix:atomix-storage:jar:3.1.9"
+artifact_map["@atomix_utils//:atomix_utils"] = "mvn:io.atomix:atomix-utils:jar:3.1.9"
 artifact_map["@classgraph//:classgraph"] = "mvn:io.github.classgraph:classgraph:jar:4.2.3"
 artifact_map["@commons_codec//:commons_codec"] = "mvn:commons-codec:commons-codec:jar:1.10"
 artifact_map["@commons_cli//:commons_cli"] = "mvn:commons-cli:commons-cli:jar:1.3"
diff --git a/tools/dev/docker/Dockerfile-sshd b/tools/dev/docker/Dockerfile-sshd
index 0a9703d..2229787 100644
--- a/tools/dev/docker/Dockerfile-sshd
+++ b/tools/dev/docker/Dockerfile-sshd
@@ -2,7 +2,7 @@
 LABEL maintainer="Eric Tang <qcorba at gmail.com>"
 
 ARG ATOMIX_VERSION
-ENV ENV_ATOMIX_VERSION=${ATOMIX_VERSION:-3.1.5}
+ENV ENV_ATOMIX_VERSION=${ATOMIX_VERSION:-3.1.9}
 
 RUN apt-get update 
 RUN DEBIAN_FRONTEND=noninteractive apt-get -y install \
@@ -66,7 +66,7 @@
 
 # Install Atomix
 RUN set -eux; \
-#   curl -o /tmp/atomix.tar.gz -XGET https://oss.sonatype.org/content/repositories/releases/io/atomix/atomix-dist/3.1.5/atomix-dist-3.1.5.tar.gz; \
+#   curl -o /tmp/atomix.tar.gz -XGET https://oss.sonatype.org/content/repositories/releases/io/atomix/atomix-dist/3.1.9/atomix-dist-3.1.9.tar.gz; \
     curl -o /tmp/atomix.tar.gz https://repo1.maven.org/maven2/io/atomix/atomix-dist/$ENV_ATOMIX_VERSION/atomix-dist-$ENV_ATOMIX_VERSION.tar.gz; \
     mkdir /opt/atomix; \
     tar zxmf /tmp/atomix.tar.gz -C /opt/atomix; \
diff --git a/tools/test/bin/atomix-push-bits b/tools/test/bin/atomix-push-bits
index e0375bd..d82321c 100755
--- a/tools/test/bin/atomix-push-bits
+++ b/tools/test/bin/atomix-push-bits
@@ -26,7 +26,7 @@
 
 . $ONOS_ROOT/tools/build/envDefaults
 
-ATOMIX_VERSION=${ATOMIX_VERSION:-3.1.5}
+ATOMIX_VERSION=${ATOMIX_VERSION:-3.1.9}
 ATOMIX_MAVEN=~/.m2/repository/io/atomix/atomix-dist/$ATOMIX_VERSION/atomix-dist-$ATOMIX_VERSION.tar.gz
 ATOMIX_LOCAL=/tmp/atomix-$ATOMIX_VERSION.tar.gz
 ATOMIX_REMOTE=https://oss.sonatype.org/content/repositories/releases/io/atomix/atomix-dist/$ATOMIX_VERSION/atomix-dist-$ATOMIX_VERSION.tar.gz
diff --git a/tools/test/scenarios/odtn/createOdtnCell.sh b/tools/test/scenarios/odtn/createOdtnCell.sh
index 91f9197..8e5f74d 100755
--- a/tools/test/scenarios/odtn/createOdtnCell.sh
+++ b/tools/test/scenarios/odtn/createOdtnCell.sh
@@ -16,7 +16,7 @@
 echo "The public key in local host is: $SSH_KEY"
 
 # Create Atomix cluster using Atomix docker image
-ATOMIX_IMAGE=atomix/atomix:3.1.5
+ATOMIX_IMAGE=atomix/atomix:3.1.9
 for i in {1..3}; do
     echo "Setting up atomix-$i..."
     docker container run --detach --name atomix-$i --hostname atomix-$i \