get back the missing agents
diff --git a/lib/jamm-0.2.5.jar b/lib/jamm-0.2.5.jar
new file mode 100644
index 0000000..ef8750d
--- /dev/null
+++ b/lib/jamm-0.2.5.jar
Binary files differ
diff --git a/start-onos-embedded.sh b/start-onos-embedded.sh
index 8688f69..afecfe8 100755
--- a/start-onos-embedded.sh
+++ b/start-onos-embedded.sh
@@ -9,6 +9,7 @@
ONOS_LOG="${LOGDIR}/onos.`hostname`.log"
PCAP_LOG="${LOGDIR}/onos.`hostname`.pcap"
LOGS="$ONOS_LOG $PCAP_LOG"
+CASSANDRA_DIR=${HOME}/apache-cassandra-1.2.4
# Set JVM options
JVM_OPTS=""
@@ -17,7 +18,7 @@
#JVM_OPTS="$JVM_OPTS -XX:+UseParallelGC -XX:+AggressiveOpts -XX:+UseFastAccessorMethods"
JVM_OPTS="$JVM_OPTS -XX:+UseConcMarkSweepGC -XX:+UseAdaptiveSizePolicy -XX:+AggressiveOpts -XX:+UseFastAccessorMethods"
JVM_OPTS="$JVM_OPTS -XX:MaxInlineSize=8192 -XX:FreqInlineSize=8192"
-JVM_OPTS="$JVM_OPTS -javaagent:lib/jamm-0.2.5.jar"
+JVM_OPTS="$JVM_OPTS -javaagent:$ONOS_HOME/lib/jamm-0.2.5.jar"
JVM_OPTS="$JVM_OPTS -XX:CompileThreshold=1500 -XX:PreBlockSpin=8 \
-XX:+UseThreadPriorities \
-XX:ThreadPriorityPolicy=42 \
diff --git a/start-onos-jacoco.sh b/start-onos-jacoco.sh
new file mode 100755
index 0000000..495141d
--- /dev/null
+++ b/start-onos-jacoco.sh
@@ -0,0 +1,184 @@
+#!/bin/bash
+
+# Set paths
+if [ -z "${ONOS_HOME}" ]; then
+ ONOS_HOME=`dirname $0`
+fi
+
+## Because the script change dir to $ONOS_HOME, we can set ONOS_LOGBACK and LOGDIR relative to $ONOS_HOME
+#ONOS_LOGBACK="${ONOS_HOME}/logback.`hostname`.xml"
+#LOGDIR=${ONOS_HOME}/onos-logs
+ONOS_LOGBACK="./logback.`hostname`.xml"
+LOGDIR=./onos-logs
+ONOS_LOG="${LOGDIR}/onos.`hostname`.log"
+PCAP_LOG="${LOGDIR}/onos.`hostname`.pcap"
+LOGS="$ONOS_LOG $PCAP_LOG"
+
+# Set JVM options
+JVM_OPTS=""
+## If you want JaCoCo Code Coverage reports... uncomment line below
+JVM_OPTS="$JVM_OPTS -javaagent:${ONOS_HOME}/lib/jacocoagent.jar=dumponexit=true,output=file,destfile=${LOGDIR}/jacoco.exec"
+JVM_OPTS="$JVM_OPTS -server -d64"
+#JVM_OPTS="$JVM_OPTS -Xmx2g -Xms2g -Xmn800m"
+JVM_OPTS="$JVM_OPTS -Xmx1g -Xms1g -Xmn800m"
+#JVM_OPTS="$JVM_OPTS -XX:+UseParallelGC -XX:+AggressiveOpts -XX:+UseFastAccessorMethods"
+JVM_OPTS="$JVM_OPTS -XX:+UseConcMarkSweepGC -XX:+UseAdaptiveSizePolicy -XX:+AggressiveOpts -XX:+UseFastAccessorMethods"
+JVM_OPTS="$JVM_OPTS -XX:MaxInlineSize=8192 -XX:FreqInlineSize=8192"
+JVM_OPTS="$JVM_OPTS -XX:CompileThreshold=1500 -XX:PreBlockSpin=8"
+JVM_OPTS="$JVM_OPTS -XX:OnError=crash-logger" ;# For dumping core
+#JVM_OPTS="$JVM_OPTS -Dpython.security.respectJavaAccessibility=false"
+JVM_OPTS="$JVM_OPTS -XX:CompileThreshold=1500 -XX:PreBlockSpin=8 \
+ -XX:+UseThreadPriorities \
+ -XX:ThreadPriorityPolicy=42 \
+ -XX:+UseCompressedOops \
+ -Dcom.sun.management.jmxremote.port=7189 \
+ -Dcom.sun.management.jmxremote.ssl=false \
+ -Dcom.sun.management.jmxremote.authenticate=false"
+JVM_OPTS="$JVM_OPTS -Dhazelcast.logging.type=slf4j"
+
+# Set ONOS core main class
+MAIN_CLASS="net.onrc.onos.ofcontroller.core.Main"
+
+if [ -z "${MVN}" ]; then
+ MVN="mvn -o"
+fi
+
+#<logger name="net.floodlightcontroller.linkdiscovery.internal" level="TRACE"/>
+#<appender-ref ref="STDOUT" />
+
+function lotate {
+ logfile=$1
+ nr_max=${2:-10}
+ if [ -f $logfile ]; then
+ for i in `seq $(expr $nr_max - 1) -1 1`; do
+ if [ -f ${logfile}.${i} ]; then
+ mv -f ${logfile}.${i} ${logfile}.`expr $i + 1`
+ fi
+ done
+ mv $logfile $logfile.1
+ fi
+}
+
+function start {
+ if [ ! -d ${LOGDIR} ]; then
+ mkdir -p ${LOGDIR}
+ fi
+ # Backup log files
+ for log in ${LOGS}; do
+ echo "rotate log: $log"
+ if [ -f ${log} ]; then
+ lotate ${log}
+ fi
+ done
+
+# Create a logback file if required
+ if [ ! -f ${ONOS_LOGBACK} ]; then
+ cat <<EOF_LOGBACK >${ONOS_LOGBACK}
+<configuration scan="true" debug="true">
+<appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender">
+<encoder>
+<pattern>%level [%logger:%thread] %msg%n</pattern>
+</encoder>
+</appender>
+
+<appender name="FILE" class="ch.qos.logback.core.FileAppender">
+<file>${ONOS_LOG}</file>
+<encoder>
+<pattern>%date %level [%thread] %logger{10} [%file:%line] %msg%n</pattern>
+</encoder>
+</appender>
+
+<logger name="org" level="WARN"/>
+<logger name="LogService" level="WARN"/> <!-- Restlet access logging -->
+<logger name="net.floodlightcontroller.logging" level="WARN"/>
+
+<root level="DEBUG">
+<appender-ref ref="FILE" />
+</root>
+</configuration>
+EOF_LOGBACK
+ fi
+
+ # Run floodlight
+ echo "Starting ONOS controller ..."
+ echo
+
+ # XXX : MVN has to run at the project top dir
+ echo $ONOS_HOME
+ cd ${ONOS_HOME}
+ pwd
+ echo "${MVN} exec:exec -Dexec.executable=\"java\" -Dexec.args=\"${JVM_OPTS} -Dlogback.configurationFile=${ONOS_LOGBACK} -cp %classpath ${MAIN_CLASS} -cf ./conf/onos.properties\""
+
+ ${MVN} exec:exec -Dexec.executable="java" -Dexec.args="${JVM_OPTS} -Dlogback.configurationFile=${ONOS_LOGBACK} -cp %classpath ${MAIN_CLASS} -cf ./conf/onos.properties" > ${LOGDIR}/onos.`hostname`.stdout 2>${LOGDIR}/onos.`hostname`.stderr &
+
+ echo "Waiting for ONOS to start..."
+ COUNT=0
+ ESTATE=0
+ while [ "$COUNT" != "10" ]; do
+ echo -n "."
+ sleep 1
+# COUNT=$((COUNT + 1))
+# sleep $COUNT
+ n=`jps -l |grep "${MAIN_CLASS}" | wc -l`
+ if [ "$n" -ge "1" ]; then
+ echo ""
+ exit 0
+ fi
+ done
+ echo "Timed out"
+ exit 1
+
+# echo "java ${JVM_OPTS} -Dlogback.configurationFile=${ONOS_LOGBACK} -jar ${ONOS_JAR} -cf ./onos.properties > /dev/null 2>&1 &"
+# sudo -b /usr/sbin/tcpdump -n -i eth0 -s0 -w ${PCAP_LOG} 'tcp port 6633' > /dev/null 2>&1
+}
+
+function stop {
+ # Kill the existing processes
+ flpid=`jps -l |grep ${MAIN_CLASS} | awk '{print $1}'`
+ tdpid=`ps -edalf |grep tcpdump |grep ${PCAP_LOG} | awk '{print $4}'`
+ pids="$flpid $tdpid"
+ for p in ${pids}; do
+ if [ x$p != "x" ]; then
+ kill -TERM $p
+ echo "Killed existing process (pid: $p)"
+ fi
+ done
+}
+
+function check_db {
+ if [ -d "/tmp/cassandra.titan" ]; then
+ echo "Cassandra is running on local berkely db. Exitting"
+ exit
+ fi
+ n=`ps -edalf |grep java |grep apache-cassandra | wc -l`
+ if [ x$n == "x0" ]; then
+ echo "Cassandra is not running. Exitting"
+ exit
+ fi
+}
+
+case "$1" in
+ start)
+ stop
+ check_db
+ start
+ ;;
+ startifdown)
+ n=`jps -l |grep "${MAIN_CLASS}" | wc -l`
+ if [ $n == 0 ]; then
+ start
+ else
+ echo "$n instance of onos running"
+ fi
+ ;;
+ stop)
+ stop
+ ;;
+ status)
+ n=`jps -l |grep "${MAIN_CLASS}" | wc -l`
+ echo "$n instance of onos running"
+ ;;
+ *)
+ echo "Usage: $0 {start|stop|restart|status|startifdown}"
+ exit 1
+esac
diff --git a/start-onos.sh b/start-onos.sh
index 495141d..ad643c4 100755
--- a/start-onos.sh
+++ b/start-onos.sh
@@ -17,7 +17,7 @@
# Set JVM options
JVM_OPTS=""
## If you want JaCoCo Code Coverage reports... uncomment line below
-JVM_OPTS="$JVM_OPTS -javaagent:${ONOS_HOME}/lib/jacocoagent.jar=dumponexit=true,output=file,destfile=${LOGDIR}/jacoco.exec"
+#JVM_OPTS="$JVM_OPTS -javaagent:${ONOS_HOME}/lib/jacocoagent.jar=dumponexit=true,output=file,destfile=${LOGDIR}/jacoco.exec"
JVM_OPTS="$JVM_OPTS -server -d64"
#JVM_OPTS="$JVM_OPTS -Xmx2g -Xms2g -Xmn800m"
JVM_OPTS="$JVM_OPTS -Xmx1g -Xms1g -Xmn800m"