[ONOS-4711] Removed cyclic dependencies

Change-Id: I9ffea9a1a1b72f6ed3a23c0edb04cfc37bd8e48e
diff --git a/utils/yangutils/plugin/src/main/java/org/onosproject/yangutils/plugin/manager/YangPluginUtils.java b/utils/yangutils/plugin/src/main/java/org/onosproject/yangutils/plugin/manager/YangPluginUtils.java
new file mode 100644
index 0000000..ef218d5
--- /dev/null
+++ b/utils/yangutils/plugin/src/main/java/org/onosproject/yangutils/plugin/manager/YangPluginUtils.java
@@ -0,0 +1,296 @@
+/*
+ * Copyright 2016-present Open Networking Laboratory
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.onosproject.yangutils.plugin.manager;
+
+import java.io.File;
+import java.io.FileInputStream;
+import java.io.FileOutputStream;
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.ObjectInputStream;
+import java.io.ObjectOutputStream;
+import java.nio.file.Files;
+import java.nio.file.StandardCopyOption;
+import java.util.ArrayList;
+import java.util.Enumeration;
+import java.util.Iterator;
+import java.util.List;
+import java.util.Set;
+import java.util.jar.JarEntry;
+import java.util.jar.JarFile;
+import org.apache.maven.artifact.repository.ArtifactRepository;
+import org.apache.maven.model.Dependency;
+import org.apache.maven.model.Resource;
+import org.apache.maven.project.MavenProject;
+import org.onosproject.yangutils.datamodel.YangNode;
+import org.slf4j.Logger;
+import org.sonatype.plexus.build.incremental.BuildContext;
+
+import static org.onosproject.yangutils.utils.UtilConstants.HYPHEN;
+import static org.onosproject.yangutils.utils.UtilConstants.JAR;
+import static org.onosproject.yangutils.utils.UtilConstants.PERIOD;
+import static org.onosproject.yangutils.utils.UtilConstants.SLASH;
+import static org.onosproject.yangutils.utils.UtilConstants.TEMP;
+import static org.onosproject.yangutils.utils.UtilConstants.YANG_RESOURCES;
+import static org.onosproject.yangutils.utils.io.impl.YangIoUtils.getCamelCase;
+import static org.onosproject.yangutils.utils.io.impl.YangIoUtils.getPackageDirPathFromJavaJPackage;
+import static org.slf4j.LoggerFactory.getLogger;
+
+/**
+ * Represents YANG plugin utilities.
+ */
+public final class YangPluginUtils {
+
+    private static final Logger log = getLogger(YangPluginUtils.class);
+
+    private static final String TARGET_RESOURCE_PATH = SLASH + TEMP + SLASH + YANG_RESOURCES + SLASH;
+
+    private static final String SERIALIZED_FILE_EXTENSION = ".ser";
+
+    private YangPluginUtils() {
+    }
+
+    /**
+     * Adds generated source directory to the compilation root.
+     *
+     * @param source  directory
+     * @param project current maven project
+     * @param context current build context
+     */
+    public static void addToCompilationRoot(String source, MavenProject project, BuildContext context) {
+        project.addCompileSourceRoot(source);
+        context.refresh(project.getBasedir());
+        log.info("Source directory added to compilation root: " + source);
+    }
+
+    /**
+     * Copies YANG files to the current project's output directory.
+     *
+     * @param yangFileInfo list of YANG files
+     * @param outputDir    project's output directory
+     * @param project      maven project
+     * @throws IOException when fails to copy files to destination resource directory
+     */
+    public static void copyYangFilesToTarget(Set<YangFileInfo> yangFileInfo, String outputDir, MavenProject project)
+            throws IOException {
+
+        List<File> files = getListOfFile(yangFileInfo);
+
+        String path = outputDir + TARGET_RESOURCE_PATH;
+        File targetDir = new File(path);
+        targetDir.mkdirs();
+
+        for (File file : files) {
+            Files.copy(file.toPath(),
+                    new File(path + file.getName()).toPath(),
+                    StandardCopyOption.REPLACE_EXISTING);
+        }
+        addToProjectResource(outputDir + SLASH + TEMP + SLASH, project);
+    }
+
+    /**
+     * Provides a list of files from list of strings.
+     *
+     * @param yangFileInfo set of yang file information
+     * @return list of files
+     */
+    private static List<File> getListOfFile(Set<YangFileInfo> yangFileInfo) {
+        List<File> files = new ArrayList<>();
+        Iterator<YangFileInfo> yangFileIterator = yangFileInfo.iterator();
+        while (yangFileIterator.hasNext()) {
+            YangFileInfo yangFile = yangFileIterator.next();
+            if (yangFile.isForTranslator()) {
+                files.add(new File(yangFile.getYangFileName()));
+            }
+        }
+        return files;
+    }
+
+    /**
+     * Serializes data-model.
+     *
+     * @param directory   base directory for serialized files
+     * @param fileInfoSet YANG file info set
+     * @param project     maven project
+     * @param operation   true if need to add to resource
+     * @throws IOException when fails to do IO operations
+     */
+    public static void serializeDataModel(String directory, Set<YangFileInfo> fileInfoSet,
+                                          MavenProject project, boolean operation) throws IOException {
+
+        String serFileDirPath = directory + TARGET_RESOURCE_PATH;
+        File dir = new File(serFileDirPath);
+        dir.mkdirs();
+
+        if (operation) {
+            addToProjectResource(directory + SLASH + TEMP + SLASH, project);
+        }
+
+        for (YangFileInfo fileInfo : fileInfoSet) {
+
+            String serFileName = serFileDirPath + getCamelCase(fileInfo.getRootNode().getName(), null)
+                    + SERIALIZED_FILE_EXTENSION;
+            fileInfo.setSerializedFile(serFileName);
+            FileOutputStream fileOutputStream = new FileOutputStream(serFileName);
+            ObjectOutputStream objectOutputStream = new ObjectOutputStream(fileOutputStream);
+            objectOutputStream.writeObject(fileInfo.getRootNode());
+            objectOutputStream.close();
+            fileOutputStream.close();
+        }
+    }
+
+    /**
+     * Returns de-serializes YANG data-model nodes.
+     *
+     * @param serailizedfileInfoSet YANG file info set
+     * @return de-serializes YANG data-model nodes
+     * @throws IOException when fails do IO operations
+     */
+    public static List<YangNode> deSerializeDataModel(List<String> serailizedfileInfoSet) throws IOException {
+
+        List<YangNode> nodes = new ArrayList<>();
+        for (String fileInfo : serailizedfileInfoSet) {
+            YangNode node = null;
+            try {
+                FileInputStream fileInputStream = new FileInputStream(fileInfo);
+                ObjectInputStream objectInputStream = new ObjectInputStream(fileInputStream);
+                node = (YangNode) objectInputStream.readObject();
+                nodes.add(node);
+                objectInputStream.close();
+                fileInputStream.close();
+            } catch (IOException | ClassNotFoundException e) {
+                throw new IOException(fileInfo + " not found.");
+            }
+        }
+        return nodes;
+    }
+
+    /**
+     * Returns list of jar path.
+     *
+     * @param project         maven project
+     * @param localRepository local repository
+     * @param remoteRepos     remote repository
+     * @return list of jar paths
+     */
+    private static List<String> resolveDependecyJarPath(MavenProject project, ArtifactRepository localRepository,
+                                                        List<ArtifactRepository> remoteRepos) {
+
+        StringBuilder path = new StringBuilder();
+        List<String> jarPaths = new ArrayList<>();
+        for (Dependency dependency : project.getDependencies()) {
+
+            path.append(localRepository.getBasedir());
+            path.append(SLASH);
+            path.append(getPackageDirPathFromJavaJPackage(dependency.getGroupId()));
+            path.append(SLASH);
+            path.append(dependency.getArtifactId());
+            path.append(SLASH);
+            path.append(dependency.getVersion());
+            path.append(SLASH);
+            path.append(dependency.getArtifactId() + HYPHEN + dependency.getVersion() + PERIOD + JAR);
+            File jarFile = new File(path.toString());
+            if (jarFile.exists()) {
+                jarPaths.add(path.toString());
+            }
+            path.delete(0, path.length());
+        }
+
+        for (ArtifactRepository repo : remoteRepos) {
+            // TODO: add resolver for remote repo.
+        }
+        return jarPaths;
+    }
+
+    /**
+     * Resolves inter jar dependencies.
+     *
+     * @param project         current maven project
+     * @param localRepository local maven repository
+     * @param remoteRepos     list of remote repository
+     * @param directory       directory for serialized files
+     * @return list of resolved datamodel nodes
+     * @throws IOException when fails to do IO operations
+     */
+    public static List<YangNode> resolveInterJarDependencies(MavenProject project, ArtifactRepository localRepository,
+                                                             List<ArtifactRepository> remoteRepos, String directory)
+            throws IOException {
+
+        List<String> dependeciesJarPaths = resolveDependecyJarPath(project, localRepository, remoteRepos);
+        List<YangNode> resolvedDataModelNodes = new ArrayList<>();
+        for (String dependecy : dependeciesJarPaths) {
+            resolvedDataModelNodes.addAll(deSerializeDataModel(parseJarFile(dependecy, directory)));
+        }
+        return resolvedDataModelNodes;
+    }
+
+    /**
+     * Parses jar file and returns list of serialized file names.
+     *
+     * @param jarFile   jar file to be parsed
+     * @param directory directory for keeping the searized files
+     * @return list of serialized files
+     * @throws IOException when fails to do IO operations
+     */
+    public static List<String> parseJarFile(String jarFile, String directory)
+            throws IOException {
+
+        List<String> serailizedFiles = new ArrayList<>();
+        JarFile jar = new JarFile(jarFile);
+        Enumeration<?> enumEntries = jar.entries();
+
+        File serializedFileDir = new File(directory);
+        serializedFileDir.mkdirs();
+        while (enumEntries.hasMoreElements()) {
+            JarEntry file = (JarEntry) enumEntries.nextElement();
+            if (file.getName().endsWith(SERIALIZED_FILE_EXTENSION)) {
+                if (file.getName().contains(SLASH)) {
+                    String[] strArray = file.getName().split(SLASH);
+                    String tempPath = "";
+                    for (int i = 0; i < strArray.length - 1; i++) {
+                        tempPath = SLASH + tempPath + SLASH + strArray[i];
+                    }
+                    File dir = new File(directory + tempPath);
+                    dir.mkdirs();
+                }
+                File serailizedFile = new File(directory + SLASH + file.getName());
+                if (file.isDirectory()) {
+                    serailizedFile.mkdirs();
+                    continue;
+                }
+                InputStream inputStream = jar.getInputStream(file);
+
+                FileOutputStream fileOutputStream = new FileOutputStream(serailizedFile);
+                while (inputStream.available() > 0) {
+                    fileOutputStream.write(inputStream.read());
+                }
+                fileOutputStream.close();
+                inputStream.close();
+                serailizedFiles.add(serailizedFile.toString());
+            }
+        }
+        jar.close();
+        return serailizedFiles;
+    }
+
+    /* Adds directory to resources of project */
+    private static void addToProjectResource(String dir, MavenProject project) {
+        Resource rsc = new Resource();
+        rsc.setDirectory(dir);
+        project.addResource(rsc);
+    }
+}