Fixing javadocs and adding missing package javadocs.
Also marked a few packages and classes as deprecated.

Change-Id: I8629ad001f218f92c35721daa3b7c0ebe0916c27
diff --git a/docs/pom.xml b/docs/pom.xml
index b49f157..3392e73 100644
--- a/docs/pom.xml
+++ b/docs/pom.xml
@@ -92,7 +92,7 @@
                         <group>
                             <title>Sample Applications</title>
                             <packages>
-                                org.onlab.onos.tvue:org.onlab.onos.fwd:org.onlab.onos.ifwd:org.onlab.onos.mobility:org.onlab.onos.proxyarp:org.onlab.onos.foo:org.onlab.onos.calendar:org.onlab.onos.optical.*:org.onlab.onos.sdnip:org.onlab.onos.sdnip.*:org.onlab.onos.config
+                                org.onlab.onos.tvue:org.onlab.onos.fwd:org.onlab.onos.ifwd:org.onlab.onos.mobility:org.onlab.onos.proxyarp:org.onlab.onos.foo:org.onlab.onos.calendar:org.onlab.onos.optical:org.onlab.onos.optical.*:org.onlab.onos.sdnip:org.onlab.onos.sdnip.*:org.onlab.onos.config
                             </packages>
                         </group>
                         <group>