Fixing javadocs and adding missing package javadocs.
Also marked a few packages and classes as deprecated.

Change-Id: I8629ad001f218f92c35721daa3b7c0ebe0916c27
diff --git a/apps/optical/src/main/java/org/onlab/onos/optical/provisioner/OpticalPathProvisioner.java b/apps/optical/src/main/java/org/onlab/onos/optical/OpticalPathProvisioner.java
similarity index 99%
rename from apps/optical/src/main/java/org/onlab/onos/optical/provisioner/OpticalPathProvisioner.java
rename to apps/optical/src/main/java/org/onlab/onos/optical/OpticalPathProvisioner.java
index 8b78800..a026810 100644
--- a/apps/optical/src/main/java/org/onlab/onos/optical/provisioner/OpticalPathProvisioner.java
+++ b/apps/optical/src/main/java/org/onlab/onos/optical/OpticalPathProvisioner.java
@@ -13,7 +13,7 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
-package org.onlab.onos.optical.provisioner;
+package org.onlab.onos.optical;
 
 import java.util.ArrayList;
 import java.util.HashMap;
diff --git a/apps/optical/src/main/java/org/onlab/onos/optical/cfg/OpticalConfigProvider.java b/apps/optical/src/main/java/org/onlab/onos/optical/cfg/OpticalConfigProvider.java
index fd9def1..68db55a 100644
--- a/apps/optical/src/main/java/org/onlab/onos/optical/cfg/OpticalConfigProvider.java
+++ b/apps/optical/src/main/java/org/onlab/onos/optical/cfg/OpticalConfigProvider.java
@@ -58,7 +58,7 @@
  * operations.
  *
  */
-
+@Deprecated
 @JsonIgnoreProperties(ignoreUnknown = true)
 //@Component(immediate = true)
 public class OpticalConfigProvider extends AbstractProvider implements DeviceProvider, LinkProvider {
diff --git a/apps/optical/src/main/java/org/onlab/onos/optical/cfg/OpticalLinkDescription.java b/apps/optical/src/main/java/org/onlab/onos/optical/cfg/OpticalLinkDescription.java
index 6cccfff..7e289f0 100644
--- a/apps/optical/src/main/java/org/onlab/onos/optical/cfg/OpticalLinkDescription.java
+++ b/apps/optical/src/main/java/org/onlab/onos/optical/cfg/OpticalLinkDescription.java
@@ -22,6 +22,7 @@
 /**
  * Public class corresponding to JSON described data model.
  */
+@Deprecated
 public class OpticalLinkDescription {
     protected String type;
     protected Boolean allowed;
diff --git a/apps/optical/src/main/java/org/onlab/onos/optical/cfg/OpticalNetworkConfig.java b/apps/optical/src/main/java/org/onlab/onos/optical/cfg/OpticalNetworkConfig.java
index 4116463..ac2b4f3 100644
--- a/apps/optical/src/main/java/org/onlab/onos/optical/cfg/OpticalNetworkConfig.java
+++ b/apps/optical/src/main/java/org/onlab/onos/optical/cfg/OpticalNetworkConfig.java
@@ -24,6 +24,7 @@
 /**
  * Public class corresponding to JSON described data model.
  */
+@Deprecated
 public class OpticalNetworkConfig {
     protected static final Logger log = LoggerFactory.getLogger(OpticalNetworkConfig.class);
 
diff --git a/apps/optical/src/main/java/org/onlab/onos/optical/cfg/OpticalSwitchDescription.java b/apps/optical/src/main/java/org/onlab/onos/optical/cfg/OpticalSwitchDescription.java
index 8c73e2d..9c6bbad 100644
--- a/apps/optical/src/main/java/org/onlab/onos/optical/cfg/OpticalSwitchDescription.java
+++ b/apps/optical/src/main/java/org/onlab/onos/optical/cfg/OpticalSwitchDescription.java
@@ -23,6 +23,7 @@
 /**
  * Public class corresponding to JSON described data model.
  */
+@Deprecated
 public class OpticalSwitchDescription {
     protected String name;
     protected long dpid;
diff --git a/apps/optical/src/main/java/org/onlab/onos/optical/cfg/PktOptLink.java b/apps/optical/src/main/java/org/onlab/onos/optical/cfg/PktOptLink.java
index f76a058..fb1d44b 100644
--- a/apps/optical/src/main/java/org/onlab/onos/optical/cfg/PktOptLink.java
+++ b/apps/optical/src/main/java/org/onlab/onos/optical/cfg/PktOptLink.java
@@ -18,6 +18,7 @@
 /**
  * Packet-optical link Java data object.
  */
+@Deprecated
 class PktOptLink {
     private String srcNodeName;
     private String snkNodeName;
diff --git a/apps/optical/src/main/java/org/onlab/onos/optical/cfg/Roadm.java b/apps/optical/src/main/java/org/onlab/onos/optical/cfg/Roadm.java
index eb09360..0367ad2 100644
--- a/apps/optical/src/main/java/org/onlab/onos/optical/cfg/Roadm.java
+++ b/apps/optical/src/main/java/org/onlab/onos/optical/cfg/Roadm.java
@@ -18,6 +18,7 @@
 /**
  * ROADM java data object converted from a JSON file.
  */
+@Deprecated
 class Roadm {
     private String name;
     private String nodeID;
diff --git a/apps/optical/src/main/java/org/onlab/onos/optical/cfg/WdmLink.java b/apps/optical/src/main/java/org/onlab/onos/optical/cfg/WdmLink.java
index 424d49a..704b0c8 100644
--- a/apps/optical/src/main/java/org/onlab/onos/optical/cfg/WdmLink.java
+++ b/apps/optical/src/main/java/org/onlab/onos/optical/cfg/WdmLink.java
@@ -18,6 +18,7 @@
 /**
  * WDM Link Java data object converted from a JSON file.
  */
+@Deprecated
 class WdmLink {
     private String srcNodeName;
     private String snkNodeName;
diff --git a/apps/optical/src/main/java/org/onlab/onos/optical/cfg/package-info.java b/apps/optical/src/main/java/org/onlab/onos/optical/cfg/package-info.java
new file mode 100644
index 0000000..678aff1
--- /dev/null
+++ b/apps/optical/src/main/java/org/onlab/onos/optical/cfg/package-info.java
@@ -0,0 +1,21 @@
+/*
+ * Copyright 2014 Open Networking Laboratory
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+/**
+ * Packet/Optical configuration.
+ */
+@Deprecated
+package org.onlab.onos.optical.cfg;
\ No newline at end of file
diff --git a/apps/optical/src/main/java/org/onlab/onos/optical/package-info.java b/apps/optical/src/main/java/org/onlab/onos/optical/package-info.java
new file mode 100644
index 0000000..561a405
--- /dev/null
+++ b/apps/optical/src/main/java/org/onlab/onos/optical/package-info.java
@@ -0,0 +1,20 @@
+/*
+ * Copyright 2014 Open Networking Laboratory
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+/**
+ * Packet/Optical application.
+ */
+package org.onlab.onos.optical;
\ No newline at end of file
diff --git a/apps/optical/src/main/java/org/onlab/onos/optical/testapp/package-info.java b/apps/optical/src/main/java/org/onlab/onos/optical/testapp/package-info.java
new file mode 100644
index 0000000..4af0834
--- /dev/null
+++ b/apps/optical/src/main/java/org/onlab/onos/optical/testapp/package-info.java
@@ -0,0 +1,20 @@
+/*
+ * Copyright 2014 Open Networking Laboratory
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+/**
+ * Packet/Optical sample forwarding applications.
+ */
+package org.onlab.onos.optical.testapp;
\ No newline at end of file