Temporarily add BND library code to the build, to try out some patches

git-svn-id: https://svn.apache.org/repos/asf/felix/trunk@723235 13f79535-47bb-0310-9956-ffa450edef68
diff --git a/bundleplugin/src/main/java/aQute/lib/osgi/Builder.java b/bundleplugin/src/main/java/aQute/lib/osgi/Builder.java
new file mode 100644
index 0000000..bdc2c7a
--- /dev/null
+++ b/bundleplugin/src/main/java/aQute/lib/osgi/Builder.java
@@ -0,0 +1,1128 @@
+/* Copyright 2006 aQute SARL 
+ * Licensed under the Apache License, Version 2.0, see http://www.apache.org/licenses/LICENSE-2.0 */
+package aQute.lib.osgi;
+
+import java.io.*;
+import java.security.*;
+import java.security.cert.*;
+import java.security.spec.*;
+import java.util.*;
+import java.util.jar.*;
+import java.util.regex.*;
+import java.util.zip.*;
+
+import aQute.bnd.make.*;
+import aQute.lib.signing.*;
+
+/**
+ * Include-Resource: ( [name '=' ] file )+
+ * 
+ * Private-Package: package-decl ( ',' package-decl )*
+ * 
+ * Export-Package: package-decl ( ',' package-decl )*
+ * 
+ * Import-Package: package-decl ( ',' package-decl )*
+ * 
+ * @version $Revision: 1.4 $
+ */
+public class Builder extends Analyzer {
+    private static final int SPLIT_MERGE_LAST  = 1;
+    private static final int SPLIT_MERGE_FIRST = 2;
+    private static final int SPLIT_ERROR       = 3;
+    private static final int SPLIT_FIRST       = 4;
+    private static final int SPLIT_DEFAULT     = 0;
+
+    List<File>               sourcePath        = new ArrayList<File>();
+    Pattern                  NAME_URL          = Pattern
+                                                       .compile("(.*)(http://.*)");
+
+    Make                     make              = new Make(this);
+    private KeyStore         keystore;
+
+    public Builder(Processor parent) {
+        super(parent);
+    }
+
+    public Builder() {
+    }
+
+    public Jar build() throws Exception {
+        if (getProperty(NOPE) != null)
+            return null;
+
+        String sub = getProperty(SUB);
+        if (sub != null && sub.trim().length() > 0)
+            error("Specified "
+                    + SUB
+                    + " but calls build() instead of builds() (might be a programmer error)");
+
+        if (getProperty(CONDUIT) != null)
+            error("Specified "
+                    + CONDUIT
+                    + " but calls build() instead of builds() (might be a programmer error");
+
+        dot = new Jar("dot");
+        addClose(dot);
+        try {
+            long modified = Long.parseLong(getProperty("base.modified"));
+            dot.updateModified(modified, "Base modified");
+        } catch (Exception e) {
+        }
+
+        doExpand(dot);
+        doIncludeResources(dot);
+
+        doConditional(dot);
+
+        // NEW!
+        // Check if we override the calculation of the
+        // manifest. We still need to calculated it because
+        // we need to have analyzed the classpath.
+
+        Manifest manifest = calcManifest();
+
+        String mf = getProperty(MANIFEST);
+        if (mf != null) {
+            File mff = getFile(mf);
+            if (mff.isFile()) {
+                try {
+                    InputStream in = new FileInputStream(mff);
+                    manifest = new Manifest(in);
+                    in.close();
+                } catch (Exception e) {
+                    error(MANIFEST + " while reading manifest file", e);
+                }
+            } else {
+                error(MANIFEST + ", no such file " + mf);
+            }
+        }
+
+        dot.setManifest(manifest);
+
+        // This must happen after we analyzed so
+        // we know what it is on the classpath
+        addSources(dot);
+        if (getProperty(POM) != null)
+            doPom(dot);
+
+        doVerify(dot);
+
+        if (dot.getResources().isEmpty())
+            error("The JAR is empty");
+
+        dot.updateModified(lastModified(), "Last Modified Processor");
+        dot.setName(getBsn());
+
+        sign(dot);
+        return dot;
+    }
+
+    /**
+     * Sign the jar file.
+     * 
+     * -sign : <alias> [ ';' 'password:=' <password> ] [ ';' 'keystore:='
+     * <keystore> ] [ ';' 'sign-password:=' <pw> ] ( ',' ... )*
+     * 
+     * @return
+     */
+
+    void sign(Jar jar) throws Exception {
+        String signing = getProperty("-sign");
+        if (signing == null)
+            return;
+
+        trace("Signing %s, with %s", getBsn(), signing);
+
+        Map<String, Map<String, String>> infos = parseHeader(signing);
+        for (Map.Entry<String, Map<String, String>> entry : infos.entrySet()) {
+            String alias = entry.getKey();
+            String keystoreLocation = entry.getValue().get(
+                    KEYSTORE_LOCATION_DIRECTIVE);
+            String keystoreProvider = entry.getValue().get(
+                    KEYSTORE_PROVIDER_DIRECTIVE);
+            String password = entry.getValue().get(KEYSTORE_PASSWORD_DIRECTIVE);
+            String signpassword = entry.getValue().get(SIGN_PASSWORD_DIRECTIVE);
+            KeyStore keystore = getKeystore(keystoreLocation, keystoreProvider,
+                    password);
+            if (keystore == null) {
+                error(
+                        "Cannot find keystore to sign bundle: location=%s,  provider=%s",
+                        keystoreLocation, keystoreProvider);
+            } else {
+                if (signpassword == null && !"-none".equals(signpassword))
+                    signpassword = password;
+
+                X509Certificate chain[] = getChain(keystore, alias);
+                if (chain == null) {
+                    error(
+                            "Trying to sign bundle but no signing certificate found: %s",
+                            alias);
+                    continue;
+                }
+
+                try {
+                    Key key = keystore.getKey(alias,
+                            (signpassword == null ? null : signpassword
+                                    .toCharArray()));
+                    KeyFactory keyFactory = KeyFactory.getInstance(key
+                            .getAlgorithm());
+                    KeySpec keySpec = keyFactory.getKeySpec(key,
+                            RSAPrivateKeySpec.class);
+                    PrivateKey privateKey = keyFactory.generatePrivate(keySpec);
+
+                    JarSigner signer = new JarSigner(alias, privateKey, chain);
+                    signer.signJar(jar);
+
+                } catch (UnrecoverableKeyException uke) {
+                    error(
+                            "Cannot get key to sign, likely invalid password: %s, for %s : %s",
+                            signpassword, alias, uke);
+                }
+            }
+        }
+    }
+
+    X509Certificate[] getChain(KeyStore keystore, String alias)
+            throws Exception {
+        java.security.cert.Certificate[] chain = keystore
+                .getCertificateChain(alias);
+        X509Certificate certChain[] = new X509Certificate[chain.length];
+
+        CertificateFactory cf = CertificateFactory.getInstance("X.509");
+        for (int count = 0; count < chain.length; count++) {
+            ByteArrayInputStream certIn = new ByteArrayInputStream(chain[count]
+                    .getEncoded());
+            X509Certificate cert = (X509Certificate) cf
+                    .generateCertificate(certIn);
+            certChain[count] = cert;
+        }
+        return certChain;
+    }
+
+    KeyStore getKeystore(String keystoreLocation, String keystoreProvider,
+            String password) throws Exception {
+        if (keystoreLocation == null) {
+            return getKeystore();
+        }
+        if (keystoreProvider == null)
+            keystoreProvider = "JKS";
+
+        KeyStore keystore = KeyStore.getInstance(keystoreProvider);
+        FileInputStream in = new FileInputStream(keystoreLocation);
+        try {
+            keystore.load(in, password == null ? null : password.toCharArray());
+        } finally {
+            in.close();
+        }
+        return keystore;
+    }
+
+    KeyStore getKeystore() throws Exception {
+        if (keystore != null) {
+            return keystore;
+        }
+
+        Map<String, Map<String, String>> header = parseHeader(getProperty(
+                "-keystore", "../cnf/keystore"));
+        if (header.size() == 0) {
+            error("Keystore needed but no -keystore specified");
+            return null;
+        }
+
+        if (header.size() > 1) {
+            warning("Multiple keystores specified, can only specify one: %s",
+                    header);
+        }
+        for (Map.Entry<String, Map<String, String>> entry : header.entrySet()) {
+            return keystore = getKeystore(entry.getKey(), entry.getValue().get(
+                    "provider:"), entry.getValue().get("password:"));
+        }
+        return null;
+    }
+
+    public boolean hasSources() {
+        return isTrue(getProperty(SOURCES));
+    }
+
+    protected String getImportPackages() {
+        String ip = super.getImportPackages();
+        if (ip != null)
+            return ip;
+
+        return "*";
+    }
+
+    private void doConditional(Jar dot) throws IOException {
+        Map<String, Map<String, String>> conditionals = getHeader(CONDITIONAL_PACKAGE);
+        int size;
+        do {
+            size = dot.getDirectories().size();
+            analyze();
+            analyzed = false;
+            Map<String, Map<String, String>> imports = getImports();
+
+            // Match the packages specified in conditionals
+            // against the imports. Any match must become a
+            // Private-Package
+            Map<String, Map<String, String>> filtered = merge(
+                    CONDITIONAL_PACKAGE, conditionals, imports,
+                    new HashSet<String>());
+
+            // Imports can also specify a private import. These
+            // packages must also be copied to the bundle
+            for (Map.Entry<String, Map<String, String>> entry : getImports()
+                    .entrySet()) {
+                String type = entry.getValue().get("import:");
+                if (type != null && type.equals("private"))
+                    filtered.put(entry.getKey(), entry.getValue());
+            }
+
+            // remove existing packages to prevent merge errors
+            filtered.keySet().removeAll(dot.getPackages());
+            doExpand(dot, CONDITIONAL_PACKAGE + " Private imports",
+                    replaceWitInstruction(filtered, CONDITIONAL_PACKAGE), false);
+        } while (dot.getDirectories().size() > size);
+        analyzed = true;
+    }
+
+    /**
+     * Intercept the call to analyze and cleanup versions after we have analyzed
+     * the setup. We do not want to cleanup if we are going to verify.
+     */
+
+    public void analyze() throws IOException {
+        super.analyze();
+        cleanupVersion(imports);
+        cleanupVersion(exports);
+        String version = getProperty(BUNDLE_VERSION);
+        if (version != null)
+            setProperty(BUNDLE_VERSION, cleanupVersion(version));
+    }
+
+    public void cleanupVersion(Map<String, Map<String, String>> mapOfMap) {
+        for (Iterator<Map.Entry<String, Map<String, String>>> e = mapOfMap
+                .entrySet().iterator(); e.hasNext();) {
+            Map.Entry<String, Map<String, String>> entry = e.next();
+            Map<String, String> attributes = entry.getValue();
+            if (attributes.containsKey("version")) {
+                attributes.put("version", cleanupVersion(attributes
+                        .get("version")));
+            }
+        }
+    }
+
+    /**
+     * 
+     */
+    private void addSources(Jar dot) {
+        if (!hasSources())
+            return;
+
+        Set<String> packages = new HashSet<String>();
+
+        try {
+            ByteArrayOutputStream out = new ByteArrayOutputStream();
+            getProperties().store(out, "Generated by BND, at " + new Date());
+            dot.putResource("OSGI-OPT/bnd.bnd", new EmbeddedResource(out
+                    .toByteArray(), 0));
+            out.close();
+        } catch (Exception e) {
+            error("Can not embed bnd file in JAR: " + e);
+        }
+
+        for (Iterator<String> cpe = classspace.keySet().iterator(); cpe
+                .hasNext();) {
+            String path = cpe.next();
+            path = path.substring(0, path.length() - ".class".length())
+                    + ".java";
+            String pack = getPackage(path).replace('.', '/');
+            if (pack.length() > 1)
+                pack = pack + "/";
+            boolean found = false;
+            String[] fixed = { "packageinfo", "package.html",
+                    "module-info.java", "package-info.java" };
+            for (Iterator<File> i = getSourcePath().iterator(); i.hasNext();) {
+                File root = i.next();
+                File f = getFile(root, path);
+                if (f.exists()) {
+                    found = true;
+                    if (!packages.contains(pack)) {
+                        packages.add(pack);
+                        File bdir = getFile(root, pack);
+                        for (int j = 0; j < fixed.length; j++) {
+                            File ff = getFile(bdir, fixed[j]);
+                            if (ff.isFile()) {
+                                dot.putResource("OSGI-OPT/src/" + pack
+                                        + fixed[j], new FileResource(ff));
+                            }
+                        }
+                    }
+                    dot
+                            .putResource("OSGI-OPT/src/" + path,
+                                    new FileResource(f));
+                }
+            }
+            if (!found) {
+                for (Jar jar : classpath) {
+                    Resource resource = jar.getResource(path);
+                    if (resource != null) {
+                        dot.putResource("OSGI-OPT/src", resource);
+                    } else {
+                        resource = jar.getResource("OSGI-OPT/src/" + path);
+                        if (resource != null) {
+                            dot.putResource("OSGI-OPT/src", resource);
+                        }
+                    }
+                }
+            }
+            if (getSourcePath().isEmpty())
+                warning("Including sources but " + SOURCEPATH
+                        + " does not contain any source directories ");
+            // TODO copy from the jars where they came from
+        }
+    }
+
+    boolean firstUse = true;
+
+    public Collection<File> getSourcePath() {
+        if (firstUse) {
+            firstUse = false;
+            String sp = getProperty(SOURCEPATH);
+            if (sp != null) {
+                Map<String, Map<String, String>> map = parseHeader(sp);
+                for (Iterator<String> i = map.keySet().iterator(); i.hasNext();) {
+                    String file = i.next();
+                    if (!isDuplicate(file)) {
+                        File f = getFile(file);
+                        if (!f.isDirectory()) {
+                            error("Adding a sourcepath that is not a directory: "
+                                    + f);
+                        } else {
+                            sourcePath.add(f);
+                        }
+                    }
+                }
+            }
+        }
+        return sourcePath;
+    }
+
+    private void doVerify(Jar dot) throws Exception {
+        Verifier verifier = new Verifier(dot, getProperties());
+        verifier.setPedantic(isPedantic());
+
+        // Give the verifier the benefit of our analysis
+        // prevents parsing the files twice
+        verifier.setClassSpace(classspace, contained, referred, uses);
+        verifier.verify();
+        getInfo(verifier);
+    }
+
+    private void doExpand(Jar jar) throws IOException {
+        if (getClasspath().size() == 0
+                && (getProperty(EXPORT_PACKAGE) != null || getProperty(PRIVATE_PACKAGE) != null))
+            warning("Classpath is empty. Private-Package and Export-Package can only expand from the classpath when there is one");
+
+        Map<Instruction, Map<String, String>> all = newMap();
+
+        all.putAll(replaceWitInstruction(getHeader(EXPORT_PACKAGE),
+                EXPORT_PACKAGE));
+
+        all.putAll(replaceWitInstruction(getHeader(PRIVATE_PACKAGE),
+                PRIVATE_PACKAGE));
+
+        if (isTrue(getProperty(Constants.UNDERTEST))) {
+            all.putAll(replaceWitInstruction(parseHeader(getProperty(
+                    Constants.TESTPACKAGES, "test;presence:=optional")),
+                    TESTPACKAGES));
+        }
+
+        if (all.isEmpty() && !isResourceOnly()) {
+            warning("Neither Export-Package, Private-Package, -testpackages is set, therefore no packages will be included");
+        }
+
+        doExpand(jar, "Export-Package, Private-Package, or -testpackages", all,
+                true);
+    }
+
+    /**
+     * 
+     * @param jar
+     * @param name
+     * @param instructions
+     */
+    private void doExpand(Jar jar, String name,
+            Map<Instruction, Map<String, String>> instructions,
+            boolean mandatory) {
+        Set<Instruction> superfluous = removeMarkedDuplicates(instructions
+                .keySet());
+
+        for (Iterator<Jar> c = getClasspath().iterator(); c.hasNext();) {
+            Jar now = c.next();
+            doExpand(jar, instructions, now, superfluous);
+        }
+
+        if (mandatory && superfluous.size() > 0) {
+            StringBuffer sb = new StringBuffer();
+            String del = "Instructions in " + name + " that are never used: ";
+            for (Iterator<Instruction> i = superfluous.iterator(); i.hasNext();) {
+                Instruction p = i.next();
+                sb.append(del);
+                sb.append(p.getPattern());
+                del = ", ";
+            }
+            warning(sb.toString());
+        }
+    }
+
+    /**
+     * Iterate over each directory in the class path entry and check if that
+     * directory is a desired package.
+     * 
+     * @param included
+     * @param classpathEntry
+     */
+    private void doExpand(Jar jar,
+            Map<Instruction, Map<String, String>> included, Jar classpathEntry,
+            Set<Instruction> superfluous) {
+
+        loop: for (Map.Entry<String, Map<String, Resource>> directory : classpathEntry
+                .getDirectories().entrySet()) {
+            String path = directory.getKey();
+
+            if (doNotCopy.matcher(getName(path)).matches())
+                continue;
+
+            if (directory.getValue() == null)
+                continue;
+
+            String pack = path.replace('/', '.');
+            Instruction instr = matches(included, pack, superfluous);
+            if (instr != null) {
+                // System.out.println("Pattern match: " + pack + " " +
+                // instr.getPattern() + " " + instr.isNegated());
+                if (!instr.isNegated()) {
+                    Map<String, Resource> contents = directory.getValue();
+
+                    // What to do with split packages? Well if this
+                    // directory already exists, we will check the strategy
+                    // and react accordingly.
+                    boolean overwriteResource = true;
+                    if (jar.hasDirectory(path)) {
+                        Map<String, String> directives = included.get(instr);
+
+                        switch (getSplitStrategy((String) directives
+                                .get(SPLIT_PACKAGE_DIRECTIVE))) {
+                        case SPLIT_MERGE_LAST:
+                            overwriteResource = true;
+                            break;
+
+                        case SPLIT_MERGE_FIRST:
+                            overwriteResource = false;
+                            break;
+
+                        case SPLIT_ERROR:
+                            error(diagnostic(pack, getClasspath(),
+                                    classpathEntry.source));
+                            continue loop;
+
+                        case SPLIT_FIRST:
+                            continue loop;
+
+                        default:
+                            warning(diagnostic(pack, getClasspath(),
+                                    classpathEntry.source));
+                            overwriteResource = false;
+                            break;
+                        }
+                    }
+
+                    jar.addDirectory(contents, overwriteResource);
+
+                    String key = path + "/bnd.info";
+                    Resource r = jar.getResource(key);
+                    if (r != null)
+                        jar.putResource(key, new PreprocessResource(this, r));
+
+                    if (hasSources()) {
+                        String srcPath = "OSGI-INF/src/" + path;
+                        Map<String, Resource> srcContents = classpathEntry
+                                .getDirectories().get(srcPath);
+                        if (srcContents != null) {
+                            jar.addDirectory(srcContents, overwriteResource);
+                        }
+                    }
+                }
+            }
+        }
+    }
+
+    /**
+     * Analyze the classpath for a split package
+     * 
+     * @param pack
+     * @param classpath
+     * @param source
+     * @return
+     */
+    private String diagnostic(String pack, List<Jar> classpath, File source) {
+        // Default is like merge-first, but with a warning
+        // Find the culprits
+        pack = pack.replace('.', '/');
+        List<Jar> culprits = new ArrayList<Jar>();
+        for (Iterator<Jar> i = classpath.iterator(); i.hasNext();) {
+            Jar culprit = (Jar) i.next();
+            if (culprit.getDirectories().containsKey(pack)) {
+                culprits.add(culprit);
+            }
+        }
+        return "Split package "
+                + pack
+                + "\nUse directive -split-package:=(merge-first|merge-last|error|first) on Export/Private Package instruction to get rid of this warning\n"
+                + "Package found in   " + culprits + "\n"
+                + "Reference from     " + source + "\n" + "Classpath          "
+                + classpath;
+    }
+
+    private int getSplitStrategy(String type) {
+        if (type == null)
+            return SPLIT_DEFAULT;
+
+        if (type.equals("merge-last"))
+            return SPLIT_MERGE_LAST;
+
+        if (type.equals("merge-first"))
+            return SPLIT_MERGE_FIRST;
+
+        if (type.equals("error"))
+            return SPLIT_ERROR;
+
+        if (type.equals("first"))
+            return SPLIT_FIRST;
+
+        error("Invalid strategy for split-package: " + type);
+        return SPLIT_DEFAULT;
+    }
+
+    private Map<Instruction, Map<String, String>> replaceWitInstruction(
+            Map<String, Map<String, String>> header, String type) {
+        Map<Instruction, Map<String, String>> map = newMap();
+        for (Iterator<Map.Entry<String, Map<String, String>>> e = header
+                .entrySet().iterator(); e.hasNext();) {
+            Map.Entry<String, Map<String, String>> entry = e.next();
+            String pattern = entry.getKey();
+            Instruction instr = Instruction.getPattern(pattern);
+            String presence = entry.getValue().get(PRESENCE_DIRECTIVE);
+            if ("optional".equals(presence))
+                instr.setOptional();
+            map.put(instr, entry.getValue());
+        }
+        return map;
+    }
+
+    private Instruction matches(
+            Map<Instruction, Map<String, String>> instructions, String pack,
+            Set<Instruction> superfluousPatterns) {
+        for (Instruction pattern : instructions.keySet()) {
+            if (pattern.matches(pack)) {
+                superfluousPatterns.remove(pattern);
+                return pattern;
+            }
+        }
+        return null;
+    }
+
+    private Map<String, Map<String, String>> getHeader(String string) {
+        if (string == null)
+            return Collections.emptyMap();
+        return parseHeader(getProperty(string));
+    }
+
+    /**
+     * Parse the Bundle-Includes header. Files in the bundles Include header are
+     * included in the jar. The source can be a directory or a file.
+     * 
+     * @throws IOException
+     * @throws FileNotFoundException
+     */
+    private void doIncludeResources(Jar jar) throws Exception {
+        String includes = getProperty("Bundle-Includes");
+        if (includes == null)
+            includes = getProperty("Include-Resource");
+        else
+            warning("Please use Include-Resource instead of Bundle-Includes");
+
+        if (includes == null)
+            return;
+
+        Map<String, Map<String, String>> clauses = parseHeader(includes);
+
+        for (Iterator<Map.Entry<String, Map<String, String>>> i = clauses
+                .entrySet().iterator(); i.hasNext();) {
+            Map.Entry<String, Map<String, String>> entry = i.next();
+            doIncludeResource(jar, entry.getKey(), entry.getValue());
+        }
+    }
+
+    private void doIncludeResource(Jar jar, String name,
+            Map<String, String> extra) throws ZipException, IOException,
+            Exception {
+        boolean preprocess = false;
+        if (name.startsWith("{") && name.endsWith("}")) {
+            preprocess = true;
+            name = name.substring(1, name.length() - 1).trim();
+        }
+
+        if (name.startsWith("@")) {
+            extractFromJar(jar, name.substring(1));
+        } else
+        /*
+         * NEW
+         */
+        if (extra.containsKey("literal")) {
+            String literal = (String) extra.get("literal");
+            Resource r = new EmbeddedResource(literal.getBytes("UTF-8"), 0);
+            String x = (String) extra.get("extra");
+            if (x != null)
+                r.setExtra(x);
+            jar.putResource(name, r);
+        } else {
+            String source;
+            File sourceFile;
+            String destinationPath;
+
+            String parts[] = name.split("\\s*=\\s*");
+            if (parts.length == 1) {
+                // Just a copy, destination path defined by
+                // source path.
+                source = parts[0];
+                sourceFile = getFile(source);
+                // Directories should be copied to the root
+                // but files to their file name ...
+                if (sourceFile.isDirectory())
+                    destinationPath = "";
+                else
+                    destinationPath = sourceFile.getName();
+            } else {
+                source = parts[1];
+                sourceFile = getFile(source);
+                destinationPath = parts[0];
+            }
+
+            // Some people insist on ending a directory with
+            // a slash ... it now also works if you do /=dir
+            if (destinationPath.endsWith("/"))
+                destinationPath = destinationPath.substring(0, destinationPath
+                        .length() - 1);
+
+            if (!sourceFile.exists()) {
+                noSuchFile(jar, name, extra, source, destinationPath);
+            } else
+                copy(jar, destinationPath, sourceFile, preprocess, extra);
+        }
+    }
+
+    private void noSuchFile(Jar jar, String clause, Map<String, String> extra,
+            String source, String destinationPath) throws Exception {
+        Jar src = getJarFromName(source, "Include-Resource " + source);
+        if (src != null) {
+            JarResource jarResource = new JarResource(src);
+            jar.putResource(destinationPath, jarResource);
+        } else {
+            Resource lastChance = make.process(source);
+            if (lastChance != null) {
+                jar.putResource(destinationPath, lastChance);
+            } else
+                error("Input file does not exist: " + source);
+        }
+    }
+
+    /**
+     * Extra resources from a Jar and add them to the given jar. The clause is
+     * the
+     * 
+     * @param jar
+     * @param clauses
+     * @param i
+     * @throws ZipException
+     * @throws IOException
+     */
+    private void extractFromJar(Jar jar, String name) throws ZipException,
+            IOException {
+        // Inline all resources and classes from another jar
+        // optionally appended with a modified regular expression
+        // like @zip.jar!/META-INF/MANIFEST.MF
+        int n = name.lastIndexOf("!/");
+        Pattern filter = null;
+        if (n > 0) {
+            String fstring = name.substring(n + 2);
+            name = name.substring(0, n);
+            filter = wildcard(fstring);
+        }
+        Jar sub = getJarFromName(name, "extract from jar");
+        if (sub == null)
+            error("Can not find JAR file " + name);
+        else
+            jar.addAll(sub, filter);
+    }
+
+    private Pattern wildcard(String spec) {
+        StringBuffer sb = new StringBuffer();
+        for (int j = 0; j < spec.length(); j++) {
+            char c = spec.charAt(j);
+            switch (c) {
+            case '.':
+                sb.append("\\.");
+                break;
+
+            case '*':
+                // test for ** (all directories)
+                if (j < spec.length() - 1 && spec.charAt(j + 1) == '*') {
+                    sb.append(".*");
+                    j++;
+                } else
+                    sb.append("[^/]*");
+                break;
+            default:
+                sb.append(c);
+                break;
+            }
+        }
+        String s = sb.toString();
+        try {
+            return Pattern.compile(s);
+        } catch (Exception e) {
+            error("Invalid regular expression on wildcarding: " + spec
+                    + " used *");
+        }
+        return null;
+    }
+
+    private void copy(Jar jar, String path, File from, boolean preprocess,
+            Map<String, String> extra) throws Exception {
+        if (doNotCopy.matcher(from.getName()).matches())
+            return;
+
+        if (from.isDirectory()) {
+            String next = path;
+            if (next.length() != 0)
+                next += '/';
+
+            File files[] = from.listFiles();
+            for (int i = 0; i < files.length; i++) {
+                copy(jar, next + files[i].getName(), files[i], preprocess,
+                        extra);
+            }
+        } else {
+            if (from.exists()) {
+                Resource resource = new FileResource(from);
+                if (preprocess) {
+                    resource = new PreprocessResource(this, resource);
+                }
+                jar.putResource(path, resource);
+            } else {
+                error("Input file does not exist: " + from);
+            }
+        }
+    }
+
+    private String getName(String where) {
+        int n = where.lastIndexOf('/');
+        if (n < 0)
+            return where;
+
+        return where.substring(n + 1);
+    }
+
+    public void setSourcepath(File[] files) {
+        for (int i = 0; i < files.length; i++)
+            addSourcepath(files[i]);
+    }
+
+    public void addSourcepath(File cp) {
+        if (!cp.exists())
+            warning("File on sourcepath that does not exist: " + cp);
+
+        sourcePath.add(cp);
+    }
+
+    /**
+     * Create a POM reseource for Maven containing as much information as
+     * possible from the manifest.
+     * 
+     * @param output
+     * @param builder
+     * @throws FileNotFoundException
+     * @throws IOException
+     */
+    public void doPom(Jar dot) throws FileNotFoundException, IOException {
+        {
+            Manifest manifest = dot.getManifest();
+            String name = manifest.getMainAttributes().getValue(
+                    Analyzer.BUNDLE_NAME);
+            String description = manifest.getMainAttributes().getValue(
+                    Analyzer.BUNDLE_DESCRIPTION);
+            String docUrl = manifest.getMainAttributes().getValue(
+                    Analyzer.BUNDLE_DOCURL);
+            String version = manifest.getMainAttributes().getValue(
+                    Analyzer.BUNDLE_VERSION);
+            String bundleVendor = manifest.getMainAttributes().getValue(
+                    Analyzer.BUNDLE_VENDOR);
+            ByteArrayOutputStream s = new ByteArrayOutputStream();
+            PrintStream ps = new PrintStream(s);
+            String bsn = manifest.getMainAttributes().getValue(
+                    Analyzer.BUNDLE_SYMBOLICNAME);
+            String licenses = manifest.getMainAttributes().getValue(
+                    BUNDLE_LICENSE);
+
+            if (bsn == null) {
+                error("Can not create POM unless Bundle-SymbolicName is set");
+                return;
+            }
+
+            bsn = bsn.trim();
+            int n = bsn.lastIndexOf('.');
+            if (n <= 0) {
+                error("Can not create POM unless Bundle-SymbolicName contains a .");
+                ps.close();
+                s.close();
+                return;
+            }
+            String groupId = bsn.substring(0, n);
+            String artifactId = bsn.substring(n + 1);
+            ps
+                    .println("<project xmlns='http://maven.apache.org/POM/4.0.0' xmlns:xsi='http://www.w3.org/2001/XMLSchema-instance' xsi:schemaLocation='http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd'>");
+            ps.println("  <modelVersion>4.0.0</modelVersion>");
+            ps.println("  <groupId>" + groupId + "</groupId>");
+
+            n = artifactId.indexOf(';');
+            if (n > 0)
+                artifactId = artifactId.substring(0, n).trim();
+
+            ps.println("  <artifactId>" + artifactId + "</artifactId>");
+            ps.println("  <version>" + version + "</version>");
+            if (description != null) {
+                ps.println("  <description>");
+                ps.print("    ");
+                ps.println(description);
+                ps.println("  </description>");
+            }
+            if (name != null) {
+                ps.print("  <name>");
+                ps.print(name);
+                ps.println("</name>");
+            }
+            if (docUrl != null) {
+                ps.print("  <url>");
+                ps.print(docUrl);
+                ps.println("</url>");
+            }
+
+            if (bundleVendor != null) {
+                Matcher m = NAME_URL.matcher(bundleVendor);
+                String namePart = bundleVendor;
+                String urlPart = null;
+                if (m.matches()) {
+                    namePart = m.group(1);
+                    urlPart = m.group(2);
+                }
+                ps.println("  <organization>");
+                ps.print("    <name>");
+                ps.print(namePart.trim());
+                ps.println("</name>");
+                if (urlPart != null) {
+                    ps.print("    <url>");
+                    ps.print(urlPart.trim());
+                    ps.println("</url>");
+                }
+                ps.println("  </organization>");
+            }
+            if (licenses != null) {
+                ps.println("  <licenses>");
+                Map<String, Map<String, String>> map = parseHeader(licenses);
+                for (Iterator<Map.Entry<String, Map<String, String>>> e = map
+                        .entrySet().iterator(); e.hasNext();) {
+                    Map.Entry<String, Map<String, String>> entry = e.next();
+                    ps.println("    <license>");
+                    Map<String, String> values = entry.getValue();
+                    print(ps, values, "name", "name", (String) values
+                            .get("url"));
+                    print(ps, values, "url", "url", null);
+                    print(ps, values, "distribution", "distribution", "repo");
+                    ps.println("    </license>");
+                }
+                ps.println("  </licenses>");
+            }
+            ps.println("</project>");
+            ps.close();
+            s.close();
+            dot
+                    .putResource("pom.xml", new EmbeddedResource(s
+                            .toByteArray(), 0));
+        }
+    }
+
+    /**
+     * Utility function to print a tag from a map
+     * 
+     * @param ps
+     * @param values
+     * @param string
+     * @param tag
+     * @param object
+     */
+    private void print(PrintStream ps, Map<String, String> values,
+            String string, String tag, String object) {
+        String value = (String) values.get(string);
+        if (value == null)
+            value = object;
+        if (value == null)
+            return;
+        ps.println("    <" + tag + ">" + value.trim() + "</" + tag + ">");
+    }
+
+    public void close() {
+        super.close();
+    }
+
+    /**
+     * Build Multiple jars. If the -sub command is set, we filter the file with
+     * the given patterns.
+     * 
+     * @return
+     * @throws Exception
+     */
+    public Jar[] builds() throws Exception {
+        begin();
+
+        // Are we acting as a conduit for another JAR?
+        String conduit = getProperty(CONDUIT);
+        if (conduit != null) {
+            Map<String, Map<String, String>> map = parseHeader(conduit);
+            Jar[] result = new Jar[map.size()];
+            int n = 0;
+            for (String file : map.keySet()) {
+                Jar c = new Jar(getFile(file));
+                addClose(c);
+                String name = map.get(file).get("name");
+                if (name != null)
+                    c.setName(name);
+
+                result[n++] = c;
+            }
+            return result;
+        }
+
+        // If no -sub property, then reuse this builder object
+        // other wise, build all the sub parts.
+        String sub = getProperty(SUB);
+        if (sub == null) {
+            Jar jar = build();
+            if (jar == null)
+                return new Jar[0];
+
+            return new Jar[] { jar };
+        }
+
+        List<Jar> result = new ArrayList<Jar>();
+
+        // Get the Instruction objects that match the sub header
+        Set<Instruction> subs = replaceWitInstruction(parseHeader(sub), SUB)
+                .keySet();
+
+        // Get the member files of this directory
+        List<File> members = new ArrayList<File>(Arrays.asList(getBase()
+                .listFiles()));
+
+        getProperties().remove(SUB);
+        // For each member file
+        nextFile: while (members.size() > 0) {
+
+            File file = members.remove(0);
+            if (file.equals(getPropertiesFile()))
+                continue nextFile;
+
+            for (Iterator<Instruction> i = subs.iterator(); i.hasNext();) {
+
+                Instruction instruction = i.next();
+                if (instruction.matches(file.getName())) {
+
+                    if (!instruction.isNegated()) {
+
+                        Builder builder = null;
+                        try {
+                            builder = getSubBuilder();
+                            addClose(builder);
+                            builder.setProperties(file);
+                            builder.setProperty(SUB, "");
+                            // Recursively build
+                            // TODO
+                            Jar jar = builder.build();
+                            jar.setName(builder.getBsn());
+                            result.add(jar);
+                        } catch (Exception e) {
+                            e.printStackTrace();
+                            error("Sub Building " + file, e);
+                        }
+                        if (builder != null)
+                            getInfo(builder, file.getName() + ": ");
+                    }
+
+                    // Because we matched (even though we could be negated)
+                    // we skip any remaining searches
+                    continue nextFile;
+                }
+            }
+        }
+        setProperty(SUB, sub);
+        return result.toArray(new Jar[result.size()]);
+    }
+
+    protected Builder getSubBuilder() throws Exception {
+        return new Builder(this);
+    }
+
+    /**
+     * A macro to convert a maven version to an OSGi version
+     */
+
+    public String _maven_version(String args[]) {
+        if (args.length > 2)
+            error("${maven_version} macro receives too many arguments "
+                    + Arrays.toString(args));
+        else if (args.length < 2)
+            error("${maven_version} macro has no arguments, use ${maven_version;1.2.3-SNAPSHOT}");
+        else {
+            return cleanupVersion(args[1]);
+        }
+        return null;
+    }
+
+    public String _permissions(String args[]) throws IOException {
+        StringBuilder sb = new StringBuilder();
+
+        for (String arg : args) {
+            if ("packages".equals(arg) || "all".equals(arg)) {
+                for (String imp : getImports().keySet()) {
+                    if (!imp.startsWith("java.")) {
+                        sb.append("(org.osgi.framework.PackagePermission \"");
+                        sb.append(imp);
+                        sb.append("\" \"import\")\r\n");
+                    }
+                }
+                for (String exp : getExports().keySet()) {
+                    sb.append("(org.osgi.framework.PackagePermission \"");
+                    sb.append(exp);
+                    sb.append("\" \"export\")\r\n");
+                }
+            } else if ("admin".equals(arg) || "all".equals(arg)) {
+                sb.append("(org.osgi.framework.AdminPermission)");
+            } else if ("permissions".equals(arg))
+                ;
+            else
+                error("Invalid option in ${permissions}: %s", arg);
+        }
+        return sb.toString();
+    }
+
+}